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Biological and Medicinal Chemistry

Working Paper

Sequence-defined structural transitions by calcium-responsive proteins

Marina Chang, Winnie Huang, Gatha Shambharkar, Kenny Hernandez, Danielle Mai

Version 3 posted 20 August 2024

507

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Theoretical and Computational Chemistry

Working Paper

Exploring the effects of mutagenesis on FusionRed using excited state QM/MM dynamics and classical force field simulations

Ashlyn Murphy, Mark Hix, Alice Walker

Version 1 posted 30 December 2022

197

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Physical Chemistry

Working Paper

Mechanism of Color and Photoacidity Tuning for the Protonated Green Fluorescent Protein Chromophore

Chi-Yun Lin, Steven Boxer

Version 1 posted 11 March 2020

647

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Biological and Medicinal Chemistry

Working Paper

SCONES: Self-Consistent Neural Network for Protein Stability Prediction Upon Mutation

Yashas Samaga B L, Shampa Raghunathan, U. Deva Priyakumar

Version 1 posted 04 June 2021

762

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1

Citations

Physical Chemistry

Working Paper

A Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins

Chi-Yun Lin, Matthew Romei, Luke Oltrogge, Irimpan Mathews, Steven Boxer

Version 1 posted 05 July 2019

855

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Organic Chemistry

Working Paper

A Designed Protein Binding-Pocket to Control Photochemical Isomerization

Bryan J. Lampkin, Cecilia Monteiro, Evan T. Powers, Paige M. Bouc, Jeffery W. Kelly, Brett VanVeller

Version 1 posted 03 October 2018

730

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Inorganic Chemistry

Working Paper

Engineering a Conformationally Switchable Artificial Metalloprotein

Saman Fatima, David G. Boggs, Peter J. Thompson, Noor Ali, Megan C. Thielges, Jennifer Bridwell-Rabb, Lisa Olshansky

Version 1 posted 20 September 2022

363

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Physical Chemistry

Working Paper

Assembly of a Patchy Protein into Variable 2D Lattices via Tunable, Multiscale Interactions

Shuai Zhang, Robert Alberstein, James De Yoreo, F. Akif Tezcan

Version 1 posted 23 March 2020

658

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Catalysis

Working Paper

Computational Protein Stabilization Can Affect Folding Energy Landscapes and Lead to Domain-Swapped Dimers

Klara Markova, Antonin Kunka, Klaudia Chmelova, Martin Havlasek, Petra Babkova, Sérgio M. Marques, Michal Vasina, Joan Planas-Iglesias, Radka Chaloupková, David Bednar, Zbynek Prokop, Jiri Damborsky, Martin Marek

Version 1 posted 27 January 2021

509

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Catalysis

Working Paper

Enhanced active-site electric field accelerates enzyme catalysis

Chu Zheng, Zhe Ji, Irimpan Mathews, Steven Boxer

Version 1 posted 27 January 2023

811

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Refine Search

14 results in Protein design in Keywords: Protein design

Sequence-defined structural transitions by calcium-responsive proteins

Exploring the effects of mutagenesis on FusionRed using excited state QM/MM dynamics and classical force field simulations

Mechanism of Color and Photoacidity Tuning for the Protonated Green Fluorescent Protein Chromophore

SCONES: Self-Consistent Neural Network for Protein Stability Prediction Upon Mutation

A Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins

A Designed Protein Binding-Pocket to Control Photochemical Isomerization

Engineering a Conformationally Switchable Artificial Metalloprotein

Assembly of a Patchy Protein into Variable 2D Lattices via Tunable, Multiscale Interactions

Computational Protein Stabilization Can Affect Folding Energy Landscapes and Lead to Domain-Swapped Dimers

Enhanced active-site electric field accelerates enzyme catalysis

14 results in Keywords: Protein design