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Recent Advances in Biologic Therapeutic N-Glycan Preparation Techniques and Analytical Methods for Facilitating Biomanufacturing Automation

Erin Tiwold, Aron Gyorgypal, Shishir Chundawat

Version 1 posted 13 April 2022

Title: Recent Advances in Biologic Therapeutic N-Glycan Preparation Techniques and Analytical Methods for Facilitating Biomanufacturing Automation Authors: Erin K. Tiwold1, Aron Gyorgypal2, Shishir P.S Chundawat2 1. Department of Biomedical Engineering, Rutgers The State University of New Jersey, 599 Taylor Road, Piscataway, NJ 08854, USA 2. Department of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854, USA For correspondence: Shishir Chundawat

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Theoretical and Computational Chemistry

Working Paper

Neural potentials of proteins extrapolate beyond training data

Geemi P. Wellawatte, Glen M. Hocky, Andrew D. White

Version 3 posted 04 May 2023

Journal of chemical theory and computation, 4(5):819–834, 2008. [92] Djurre H de Jong, Gurpreet Singh, WF Drew Bennett, Clement Arnarez, Tsjerk A Wassenaar, Lars V Schafer, Xavier Periole, D Peter Tieleman, and Siewert J Marrink. Improved parameters for the martini coarse-grained protein force field. Journal of chemical theory and computation, 9(1):687–697, 2013. [93] César A López, Giovanni Bellesia, Antonio Redondo, Paul Langan, Shishir PS Chundawat

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Citations

Organic Chemistry

Working Paper

Iodine(III)-Catalyzed Oxidative Cyclization of Aryl Amines to Construct Benzimidazoles

Carmen White, Sherlyn Cazares, Efren Gonzales-Cortes, Tom Driver

Version 1 posted 19 January 2024

.; Bhasin, P. S. A review on candesartan: pharmacological and pharmaceutical profile. J. Appl. Pharm. Sci. 2011, 12-17. (5) (a) Faheem, M.; Rathaur, A.; Pandey, A.; Kumar Singh, V.; Tiwari, A. K. A Review on the Modern Synthetic Approach of Benzimidazole Candidate. ChemistrySelect 2020, 5 (13), 3981-3994. (b) Pardeshi, V. A. S.; Chundawat , N. S.; Pathan, S. I.; Sukhwal, P.; Chundawat

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Biological and Medicinal Chemistry

Working Paper

Solvent-free Synthesis of polymethoxy and dichloro p-nitrophenyl hydrazones

Sodeeq Babalola, Abdullah Idris, Yeken Sani, Asmau Hamza, Nosakhare Igie, Hayatudeen Muhammad, Gowin Erumiseli, Lateef Bakare

Version 1 posted 08 April 2022

Taylor & Francis. 160 4. Duha Adnan, Bijender Singh, Surinder Kumar Mehta, Vinod Kumar, and Ramesh 161 Kataria. Simple and solvent-free practical procedure for chalcones: An expeditious, mild 162 and greener approach. Current Research in Green and Sustainable Chemistry 3, (2020) 163 100041. 164 5. Sunita Bhagat, Nutan Sharma, and Tejpal Singh Chundawat

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Theoretical and Computational Chemistry

Working Paper

Atomistic Origins of Biomass Recalcitrance in Organosolv Pretreatment

Daipayan Sarkar, Ian Santiago, Josh Vermaas

Version 1 posted 23 September 2022

Eng.510 10 (17) (2022) 5526–5537. doi:10.1021/acssuschemeng.2c00115.511 URL https://pubs.acs.org/doi/10.1021/acssuschemeng.2c00115512 [18] P. P. Thoresen, L. Matsakas, U. Rova, P. Christakopoulos, Recent513 advances in organosolv fractionation: Towards biomass fractiona-514 tion technology of the future, Bioresour. Technol. 306 (2020) 123189.515 doi:10.1016/j.biortech.2020.123189.516 URL https://linkinghub.elsevier.com/retrieve/pii/S0960852420304600517 [19] C. Zhao, Q. Shao, S. P. Chundawat

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Catalysis

Working Paper

Cooperative Activation of Cellulose with Natural Calcium

Gregory G. Facas, Vineet Maliekkal, Cheng Zhu, Matthew Neurock, Paul Dauenhauer

Version 1 posted 05 October 2020

Synthesis of Transportation Fuels from Biomass : Chemistry , Catalysts , and Engineering. Chem. Rev. 106, 4044–4098 (2006). 2. Demirbas, A. & Arin, G. An Overview of Biomass Pyrolysis. Energy Sources 24, 471-482 (2001). 3. Bridgwater, A. V. Renewable fuels and chemicals by thermal processing of biomass. Chem. Eng. J. 91, 87–102 (2003). 4. Chundawat

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Catalysis

Working Paper

Glycosidic C-O Bond Activation in Cellulose Pyrolysis: Alpha Versus Beta and Condensed Phase Hydroxyl-Catalytic Scission

Paul Dauenhauer, Vineet Maliekkal, Matthew Neurock

Version 1 posted 14 May 2020

J. 2003, 91 (2–3), 87–102. (5) Naik, S. N.; Goud, V. V.; Rout, P. K.; Dalai, A. K. Production of First and Second Generation Biofuels: A Comprehensive Review. Renew. Sustain. Energy Rev. 2010, 14 (2), 578–597. (6) Mohan, D.; Pittman, C. U.; Steele, P. H. Pyrolysis of Wood/Biomass for Bio-Oil: A Critical Review. Energy and Fuels 2006, 20 (3), 848–889. (7) Chundawat

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Citations

Analytical Chemistry

Working Paper

Direct Glycan Analysis of Biological Samples and Intact Glycoproteins by Integrating Machine Learning Driven- Surface-Enhanced Raman Scattering (SERS) and Boronic Acid Array

Qiang Hu, Hung-Jen Wu

Version 1 posted 27 March 2024

J Biomol Tech 2019, 30 40 (4), 58-63. DOI: 10.7171/jbt.19-3004-001 From NLM. 41 (40) Kinoshita, M.; Yamada, K. Recent advances and trends in sample preparation and 42 chemical modification for glycan analysis. Journal of Pharmaceutical and Biomedical 43 Analysis 2022, 207, 114424. DOI: https://doi.org/10.1016/j.jpba.2021.114424. 44 (41) Tiwold, E. K.; Gyorgypal, A.; Chundawat

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Biological and Medicinal Chemistry

Working Paper

Investigating the Non-Electrostatic Component of Substrate Positioning Dynamics

Yaoyukun Jiang, Ning Ding, Qianzhen Shao, Sebastian Stull, Zihao Cheng, Zhongyue Yang

Version 3 posted 17 November 2023

Metab. Eng. 2021, 66, 167-178, DOI: 10.1016/j.ymben.2021.03.011 From NLM Medline. (7) Ellis, L. D.; Rorrer, N. A.; Sullivan, K. P.; Otto, M.; McGeehan, J. E.; Román-Leshkov, Y.; Wierckx, N.; Beckham, G. T. Chemical and Biological Catalysis for Plastics Recycling and Upcycling. Nat. Catal. 2021, 4, 539-556, DOI: 10.1038/s41929-021-00648-4. (8) Chundawat

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Theoretical and Computational Chemistry

Working Paper

Convergence in Determining Enzyme Functional Descriptors across Kemp Eliminase Variants

Yaoyukun Jiang, Sebastian L. Stull, Qianzhen Shao, Zhongyue Yang

Version 2 posted 02 December 2022

. & Gruber-Khadjawi, M. Application of designed enzymes in organic synthesis. Chem. Rev. 111, 4141-4164 (2011). https://doi.org:10.1021/cr100386u 3 Petchey, M. R. & Grogan, G. Enzyme-Catalysed Synthesis of Secondary and Tertiary Amides. Advanced Synthesis & Catalysis 361, 3895-3914 (2019). https://doi.org:https://doi.org/10.1002/adsc.201900694 4 Chundawat

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13 results for search term: Shishir Chundawat

Recent Advances in Biologic Therapeutic N-Glycan Preparation Techniques and Analytical Methods for Facilitating Biomanufacturing Automation

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Neural potentials of proteins extrapolate beyond training data

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Iodine(III)-Catalyzed Oxidative Cyclization of Aryl Amines to Construct Benzimidazoles

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Solvent-free Synthesis of polymethoxy and dichloro p-nitrophenyl hydrazones

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Atomistic Origins of Biomass Recalcitrance in Organosolv Pretreatment

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Cooperative Activation of Cellulose with Natural Calcium

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Glycosidic C-O Bond Activation in Cellulose Pyrolysis: Alpha Versus Beta and Condensed Phase Hydroxyl-Catalytic Scission

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Direct Glycan Analysis of Biological Samples and Intact Glycoproteins by Integrating Machine Learning Driven- Surface-Enhanced Raman Scattering (SERS) and Boronic Acid Array

Extract found to contain search terms

Investigating the Non-Electrostatic Component of Substrate Positioning Dynamics

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Convergence in Determining Enzyme Functional Descriptors across Kemp Eliminase Variants

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