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13 results in Keywords: Lead optimization

Scoring Methods in Lead Optimization of Molecular Glues

Lei Jia, Dahlia Weiss, Benjamin Shields, Brian Claus, Veerabahu Shanmugasundaram, Stephen Johnson, Jennifer Riggs, Christoph Zapf

Version 3 posted 17 January 2024

1,377

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Theoretical and Computational Chemistry

Working Paper

Gargoyles: An Open Source Graph-based molecular optimization method based on Deep Reinforcement Learning

Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima

Version 1 posted 02 February 2023

321

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Theoretical and Computational Chemistry

Working Paper

Deep Scaffold Hopping with Multi-modal Transformer Neural Networks

Shuangjia Zheng, Zengrong Lei, Haitao Ai, Hongming Chen, Daiguo Deng, Yuedong Yang

Version 1 posted 28 September 2020

1,357

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Citations

Theoretical and Computational Chemistry

Working Paper

LigGPT: Molecular Generation using a Transformer-Decoder Model

Viraj Bagal, Rishal Aggarwal, P. K. Vinod, U. Deva Priyakumar

Version 1 posted 11 May 2021

3,794

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Citations

Theoretical and Computational Chemistry

Working Paper

DeltaDelta Neural Networks for Lead Optimization of Small Molecule Potency

Jose Jimenez-Luna, Laura Pérez-Benito, Gerard Martinez-Rosell, Simone Sciabola, Rubben Torella, Gary Tresadern, Gianni De Fabritiis

Version 1 posted 05 September 2019

895

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Biological and Medicinal Chemistry

Working Paper

A Free Energy Perturbation Approach to Estimate the Intrinsic Solubilities of Drug-like Small Molecules

Sayan Mondal, Gary Tresadern, Jeremy Greenwood, Byungchan Kim, Joe Kaus, Matt Wirtala, Thomas Steinbrecher, Lingle Wang, Craig Masse, Ramy Farid, Robert Abel

Version 1 posted 15 November 2019

2,457

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Citations

Biological and Medicinal Chemistry

Working Paper

To Design Scalable Free Energy Perturbation Networks, Optimal Is Not Enough

Mary Pitman, David Hahn, Gary Tresadern, David Mobley

Version 1 posted 02 December 2022

753

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Organic Chemistry

Working Paper

Matcher: An Open-Source Application for Translating Large Structure/Property Datasets into Insights for Drug Design

Andrew Hoover, Martin Spale, Brian Lahue, Danny Bitton

Version 1 posted 27 October 2022

814

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Theoretical and Computational Chemistry

Working Paper

MF-PCBA: Multi-fidelity high-throughput screening benchmarks for drug discovery and machine learning

David Buterez, Jon Paul Janet, Steven J. Kiddle, Pietro Liò

Version 1 posted 14 November 2022

565

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Biological and Medicinal Chemistry

Working Paper

Design, Synthesis, and Lead Optimisation of CHVB Series Analogues as Potent Small Molecule Inhibitors of Chikungunya Virus

Verena Battisti, Julia Moesslacher, Rana Abdelnabi, Pieter Leyssen, Ana Lucia Rosales Rosas, Lana Langendries, Mohammed Aufy, Christian Studenik, Jadel Kratz, Judith M. Rollinger, Gerhard Puerstinger, Johan Neyts, Leen Delang, Ernst Urban, Thierry Langer

Version 1 posted 27 July 2022

207

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13 results in Lead optimization in Keywords: Lead optimization

Scoring Methods in Lead Optimization of Molecular Glues

Gargoyles: An Open Source Graph-based molecular optimization method based on Deep Reinforcement Learning

Deep Scaffold Hopping with Multi-modal Transformer Neural Networks

LigGPT: Molecular Generation using a Transformer-Decoder Model

DeltaDelta Neural Networks for Lead Optimization of Small Molecule Potency

A Free Energy Perturbation Approach to Estimate the Intrinsic Solubilities of Drug-like Small Molecules

To Design Scalable Free Energy Perturbation Networks, Optimal Is Not Enough

Matcher: An Open-Source Application for Translating Large Structure/Property Datasets into Insights for Drug Design

MF-PCBA: Multi-fidelity high-throughput screening benchmarks for drug discovery and machine learning

Design, Synthesis, and Lead Optimisation of CHVB Series Analogues as Potent Small Molecule Inhibitors of Chikungunya Virus

13 results in Keywords: Lead optimization