Discovery of histone deacetylase 8 (HDAC8)-specific proteolysis-targeting chimeras with anti-cancer activity against hematological malignancies

04 April 2025, Version 1

Abstract

Histone deacetylase 8 (HDAC8) has emerged as a promising therapeutic target for several malignancies. In this study, we developed two series of cereblon (CRBN)-recruiting proteolysis-targeting chimeras (PROTACs) for targeted HDAC8 degradation, utilizing the selective HDAC8 inhibitor PCI-34051 as warhead. The pomalidomide/thalidomide-based series (BP1–BP5) exhibited strong antiproliferative activity against leukemia and multiple myeloma cells, accompanied by degradation of CRBN neosubstrates. In contrast, the phenyl glutarimide (PG)-based series (BP6–BP10) displayed low cytotoxicity, no neosubstrate degradation, and enhanced chemical stability. The hit compounds from both series, BP1 (DC50, 24 h = 20 nM, Dmax, 24 h = 99%) and its PG-based counterpart BP6 (DC50, 24 h = 81 nM, Dmax, 24 h = 93%), demonstrated highly efficient and selective HDAC8 degradation. A high-throughput drug synergy screen revealed that BP6-treated HL60 leukemia cells exhibited significantly enhanced sensitivity to the MEK inhibitor cobimetinib, suggesting that HDAC8 degradation may potentiate the therapeutic efficacy of MEK inhibition.

Keywords

cancer
HDAC8
PROTAC
targeted protein degradation
epigenetics

Supplementary materials

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Supplementary Information
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Supplementary Figures, Table, and Scheme, NMR spectra, HPLC traces
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