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Rapid Prediction of Possible Inhibitors for SARS-CoV-2 Main Protease using Docking and FPL Simulations

Pham Minh Quan, Khanh B. Vu, T. Ngoc Han Pham, Le Thi Thuy Huong, Linh Hoang Tran, Nguyen Thanh Tung, Van Vu, Trung Hai Nguyen, Son Tung Ngo

Version 2 posted 10 August 2020

861

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Theoretical and Computational Chemistry

Working Paper

SYNERGY OF ADVANCED MACHINE LEARNING AND DEEP NEURAL NETWORKS WITH CONSENSUS MOLECULAR DOCKING FOR ENHANCED POTENCY PREDICTION OF ALK INHIBITORS

The-Chuong Trinh, Tieu-Long Phan, Van-Thinh To, Thanh-An Pham, Gia-Bao Truong, Hoang-Son Le, Xuan-Truc Tran, Tuyen Ngoc Truong

Version 1 posted 05 September 2024

106

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Theoretical and Computational Chemistry

Working Paper

Adapting Language Models for Retrosynthesis Prediction

Phuong Nguyen-Van, Long Nguyen Thanh, Ha Hoang Manh, Ha Anh Pham Thi, Thanh Le Nguyen, Viet Anh Nguyen

Version 1 posted 09 July 2024

266

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Biological and Medicinal Chemistry

Working Paper

Bio-inspired synthesis and profiling of a potent antiviral flavonol targeting the lipid exchanger OSBP

Gwenaëlle Jézéquel, Zoé Grimanelli, Carole Guimard, Joëlle Bigay, Juliano Haddad, Jérôme Bignon, Cécile Apel, Vincent Steinmetz, Laurie Askenatzis, Hélène Levaïque, Clara Pradelli, Van Cuong Pham, Thi May Huong Doan, Marc Litaudon, Romain Gautier, Chaker El Kalamouni, Bruno Antonny, Sandy Desrat, Bruno Mesmin, Fanny Roussi

Version 1 posted 02 February 2024

294

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Theoretical and Computational Chemistry

Working Paper

Discovering Neuraminidase Inhibitors via Computational and Experimental Studies

Trung Hai Nguyen, Ngoc Quynh Anh Pham, Quynh Mai Thai, Van V. Van, Son Tung Ngo, Jim-Tong Horng

Version 1 posted 08 May 2024

112

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1

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Biological and Medicinal Chemistry

Working Paper

Novel machine learning approach toward classification model of HIV-1 integrase inhibitors

Tieu-Long Phan, Hoang-Son Lai Le, Gia-Bao Truong, The-Chuong Trinh, Van-Thinh To, Phuoc-Chung Van Nguyen, Thanh-An Pham, Tuyen Ngoc Truong

Version 1 posted 18 January 2024

197

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Biological and Medicinal Chemistry

Working Paper

Synthesis and Cytotoxic Activity of Madecassic Acid-Silybin Conjugate Compounds in Liver Cancer Cells

Chien Van Tran, Thao Thi Phuong Tran, Anh The Nguyen, Loc Van Tran, Ninh Thi Pham, Luu Thi Nguyen, Dung Thi Nguyen, Michelle Garrett, Nga Thi Nguyen, Thao Thi Do, Christopher Serpell, Sung Van Tran

Version 2 posted 04 March 2024

228

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Biological and Medicinal Chemistry

Working Paper

Discovery of VEGFR-2 Inhibitors employing Junction Tree Variational Encoder with Local Latent Space Bayesian Optimization and Gradient Ascent Exploration

Gia-Bao Truong, Thanh-An Pham, Van-Thinh To, Hoang-Son Lai Le, Phuoc-Chung Van Nguyen, The-Chuong Trinh, Tieu-Long Phan, Tuyen Ngoc Truong

Version 1 posted 15 July 2024

166

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Nanoscience

Working Paper

Engineering Tertiary Chirality in Helical Biopolymers

Jordan Janowski, Van Pham, Simon Vecchioni, Karol Woloszyn, Brandon Lu, Yijia Zou, Betel Erkalo, Lara Perren, Joe Rueb, Jesse Madnick, Chengde Mao, Masahico Saito, Yoel Ohayon, Nataša Jonoska, Ruojie Sha

Version 1 posted 25 September 2023

271

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Agriculture and Food Chemistry

Working Paper

Comparison of organic and conventional production methods in accumulation of biomass and bioactive compounds in Centella asiatica (L.) urban

Thao Thi Phuong Tran, Ninh Thi Pham, Nhiem Xuan Nguyen, Chien Van Tran, Loc Van Tran, Luu Thi Nguyen, Dung Thi Nguyen, Ni Thi Ngoc Huynh, Tri Luong Nguyen, Yen Thi Hoang Be, Michelle Garrett, Christopher Serpell, Sung Van Tran

Version 1 posted 21 November 2023

170

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18 results in Van Pham in Authors: Van Pham

Rapid Prediction of Possible Inhibitors for SARS-CoV-2 Main Protease using Docking and FPL Simulations

SYNERGY OF ADVANCED MACHINE LEARNING AND DEEP NEURAL NETWORKS WITH CONSENSUS MOLECULAR DOCKING FOR ENHANCED POTENCY PREDICTION OF ALK INHIBITORS

Adapting Language Models for Retrosynthesis Prediction

Bio-inspired synthesis and profiling of a potent antiviral flavonol targeting the lipid exchanger OSBP

Discovering Neuraminidase Inhibitors via Computational and Experimental Studies

Novel machine learning approach toward classification model of HIV-1 integrase inhibitors

Synthesis and Cytotoxic Activity of Madecassic Acid-Silybin Conjugate Compounds in Liver Cancer Cells

Discovery of VEGFR-2 Inhibitors employing Junction Tree Variational Encoder with Local Latent Space Bayesian Optimization and Gradient Ascent Exploration

Engineering Tertiary Chirality in Helical Biopolymers

Comparison of organic and conventional production methods in accumulation of biomass and bioactive compounds in Centella asiatica (L.) urban

18 results in Authors: Van Pham