Diels-Alder/retro-Diels-Alder Reactions as Fold Altering Chemical Stimuli to Control the Self-assembly of Aromatic Oli-goamides

19 June 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Self-assembly of aromatic oligoamides into multi-helical structures is a powerful strategy for developing complex and functional molecular architectures. As the hybridization process is directed by the folded state of the oligomers, inducing changes in the folding can be used to control the self-assembly. As one approach for this, Diels-Alder reactions on diazaanthracene monomers allow site-specific modification of aromatic oligoamides. The reaction leads to a bend in the monomer that in turn distorts the 3-dimensional structure of the oligomer. Herein, we demonstrate that this strategy can be used to control the self-assembly of the oligomers. Using reversible Diels-Alder reactions allows to switch between distinct folded states with different self-assembly preferences. This strategy can be applied during oligomer synthesis to prevent self-assembly or post-synthetically to disassemble multi-helical structures. In complex systems containing multiple oligomers, we show that the modification can further be used to direct social versus narcissistic self-sorting, allowing to switch between homomeric and heteromeric double helical assemblies.

Keywords

Aromatic Oligoamide Foldamers
Self-Assembly
Structural Exchange
Double Helices

Supplementary materials

Title
Description
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Title
(1)-triple helix
Description
cif file for 1 triple helix
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1-T
Description
.cif file for 1-T
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heteodouble helix
Description
cif file for 3*4
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2
Description
cif file for 2
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Title
3-MAL
Description
cif file for 3-MAL
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Title
3-T
Description
cif file for 3-T
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Title
2-T
Description
cif file for 2-T
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Title
TAD
Description
cif file for TAD monomer
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Title
Supporting Information
Description
Synthetic procedures, additional spectra, crystallographic tables
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