The Nobilamides: Potent Biofilm Inhibitors Produced by the Microbiota of Moon Snail Egg Masses

09 June 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Bacterial biofilm infections have become increasingly challenging to treat as bacteria living in a biofilm state are more resistant to antibiotics and protected from the host immune response. Eradicating biofilm infections generally requires treatment with high doses of antibiotics for prolonged periods; however, the rise in antibiotic resistance further challenges these treatments. Unfortunately, there are no approved drugs that inhibit or disrupt biofilm formation. Here, we leveraged our library of bacteria associated with moon snails found in Puerto Rico, using mass spectrometry-based metabolomics, to discover biofilm inhibitors. Analysis of a chemical fraction library revealed a set of peptides in fractions exhibiting potent inhibition of Staphylococcus aureus biofilms. Bioassay-guided isolation led to the isolation of lipopeptides, the nobilamides, which were previously shown to possess antibacterial activity and TRPV1 antagonist properties but were never evaluated in a biofilm inhibition assay. A thorough evaluation of the biofilm inhibition activity of A-3302-B and A-3302-A revealed they potently inhibit biofilm formation with EC50 of 161 ± 85 and 598 ± 66 nM, respectively. Interestingly, nobilamide A and B, linear analogs, are 500-fold less active than their cyclic analogs.

Keywords

biofilm
lipopeptides
moon snails
microbiome

Supplementary materials

Title
Description
Actions
Title
Supporting information
Description
NMR spectra, MS/MS fragmentation, Marfey’s analysis, additional biological assay data, media recipes and details on bacterial fraction library (PDF)
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.