Abstract
Neglected tropical diseases caused by trypanosomatid parasites such as Leishmania, Trypanosoma
brucei and Trypanosoma cruzi present a major public healthcare issue due in part to
emerging resistance. Exploring multiple targeting ligands, conjugates composed of analogs from
the ribosomal inhibitor anisomycin and glycosomal inhibitory almiramide peptides were made and
shown to be inactive compared to the parent components. On the other hand, attachment of walkynyl
chains characteristic of the lipid tails of anti-parasitic peptides to the p-position of anisomycin,
gave ethers exhibiting potent activity, rivalling that of the parent ribosomal inhibitor, especially
against resistant Leishmania strains. Cryo-electron microscopy revealed that the O-propargyl
anisomycin analog bound similarly to the highly conserved peptidyl transferase center of
the ribosome as the parent inhibitor. Thermal proteomic profiling and gene ontology analysis
demonstrated that O-propargyl anisomycin exhibited a broader mode of action including activity
against glycosome-associated proteins. Structure-activity study has revealed the utility of alkynyl
substituents for improving antiparasitic activity against resistant strains by enlarging mode of action
paving the way towards novel therapy against trypanosomatid infections.
Supplementary materials
Title
Quantitative Analysis of Protein Processes (Bubble Plot)
Description
This file contains the raw and processed data used to generate the bubble plot presented in the main manuscript. Each entry corresponds to a protein involved in distinct biological processes, along with associated quantitative metrics.
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Title
Molecular formula strings of target compounds with associated biological data
Description
This file provides the molecular formula strings with SMILES representations of synthesized compounds 20-29 that are evaluated against target to support the hypothesis of multiple targeted ligands of the study.
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Title
Charecterizations
Description
HPLC, 1H and 13C{1H} NMR, and analytical characterization of compounds 13-29 and intermediates
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Title
Cryo-EM Identified Pockets and Thermal Proteome Shift Data of compounds 7 and 20
Description
This supporting information file presents structural and proteomic data for compounds 7 and 20. Cryo-electron microscopy (Cryo-EM), highlighting predicted and experimentally observed interaction regions within relevant target proteins.
Thermal Proteome Profiling (TPP) shift data showing significant stabilization or destabilization of proteins upon treatment with compounds 7 and 20. Common protein targets affected by both compounds, suggesting convergent or complementary mechanisms of action.
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Supplementary weblinks
Title
Cryo-EM Structure
Description
The atomic coordinates and structure factors have been deposited in the Protein Data Bank (PDB) under accession code 9HL9, with the title: Cryo-EM Structure of Leishmania major 80S Ribosome with P/E-site tRNA and mRNA: LM14Cs1H3 sKO Strain.
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Cryo-EM density map
Description
The cryo-EM density map of the Leishmania major 80S ribosome in complex with compound 20 has been deposited in the Electron Microscopy Data Bank (EMDB) under accession number EMD-52247.
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