Structural Diversification of 14-Membered Macrolides by Chemoenzymatic Synthesis

06 May 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The pikromycin polyketide synthase (PKS) catalyzes formation of 12-membered macrolactone 10-deoxymethynolide, and 14-membered macrolactone narbonolide. Herein, we show the efficient diversification of novel 14-membered macrolactones from a series of unnatural pentaketides using the PikAIII/PikAIV PKS in vitro system. New macrocycles were further elaborated by the addition of D-desosamine and late-stage C-H hydroxylation. Molecular dynamics (MD) simulations and density functional theory (DFT) calculations were conducted to probe the reactivity and selectivity of this terminal catalytic step on the assembled unnatural macrolides. This approach demonstrates the flexibility and applicability of sequential biocatalytic steps for chemoenzymatic creation of complex antibiotic scaffolds.

Keywords

polyketide synthase
macrocyclic scaffolds
chemoenzymatic synthesis
molecular dynamics simulations
pikromycin pathway
density functional theory
C-H functionalization

Supplementary materials

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Supporting Information
Description
Detailed experimental and analytical methodologies, compound synthesis and characterizations, expression and purification of Pik proteins, computational methods, additional figures and tables
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