Simulations of solvent effects on excited state dynamics of p-DAPA, a red single benzene-based fluorophore

05 May 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Fluorescence-based techniques are widely used in basic science and medicine for detecting molecules and probing chemical reactions in vitro and in vivo. Red fluorophores are especially of interest due to their potential applicability for deep-tissue and whole-body imaging with low background interference. The smallest red fluorophore is the benzene-based para-diacetylphenylenediamine (p-DAPA), which has a fluorescence quantum yield of 0.06 and high brightness. However, the effect of solvent type on the photophysical properties of p-DAPA has not been extensively explored. We have employed classical force field dynamics and ab initio Born-Oppenheimer molecular dynamics (BOMD) calculations in explicit solvent to explore the ground and excited state potential energy surfaces of p-DAPA. Our results show that p-DAPA exhibits stronger fluorescence in nonpolar solvents due to the appearance of various new nonradiative decay pathways in polar solvents. This work provides insight into how p-DAPA might be adapted for biological imaging and other applications.

Keywords

p-DAPA
fluorophore
molecular dynamics
solvent
dielectric

Supplementary materials

Title
Description
Actions
Title
Supplemental information
Description
Supplemental information
Actions

Supplementary weblinks

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.