Preorganized electric fields in voltage-gated sodium channels

09 April 2025, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Enzymes are reported to catalyze reactions by generating electric fields that promote the evolution of the reaction in the active site. Although seldom used outside enzymatic catalysis, electrostatic preorganization theory and the language of electric fields can be generalized to other biological macromolecules. Here, we performed molecular dynamics simulations of human Nav1.5, Nav1.6 and Nav1.7 with the AMOEBA polarizable force field. We show that in the absence of an external potential, charged and uncharged residues generate strong electric fields that assist in Na+ motion in the pore. Our work emphasizes the importance of charge-dipole interactions in modulating Na+ dynamics, in addition to charge-charge interactions, the focus of a majority of previous studies. Finally, we find that residues share a high level of mutual information through electric fields that can enable the optimization of allosteric pathways.

Keywords

electric fields
electrostatic preorganization
polarizable force field
ion channel

Supplementary materials

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Description
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Supporting Information
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Molecular dynamics data and analysis
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