Photoaffinity Labeling Reveals a Role for the Unusual Triply Acylated Phospholipid N-Acylphosphatidylethanolamine in Lactate Homeostasis

06 March 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Most eukaryotic membranes comprise phospholipids bearing two hydrophobic tails, but N-acylphosphatidylethanolamine (NAPE) stands out as a long-known but poorly understood phospholipid with three hydrophobic groups. What little attention that NAPE has received has been devoted to understanding its metabolic functions as a precursor to N-acylethanolamines, bioactive lipids that act as endocannabinoids. Yet, levels of NAPE increase during myocardial infarction and ischemia, suggesting potential signaling roles for this lipid. Here, we exploit photoaffinity labeling (PAL) to identify NAPE-interacting proteins and elucidate signaling functions of NAPE. By positioning diazirine and alkyne groups in metabolically distinct regions of the NAPE molecule, we ensured that our PAL probe reported on interactions of NAPE and not NAE. Our studies identified several NAPE interactors, including two single-pass transmembrane proteins, CD147/Basigin and CD44, both of which serve as chaperones for monocarboxylate transporters (MCTs) from the SLC16A family that mediate lactate flux across the plasma membrane. Functional studies revealed that NAPE stimulates lactate efflux by MCTs dependent upon CD147 and CD44, establishing NAPE as a bona fide signaling lipid and pointing to potential physiological roles in metabolic and energy homeostasis that may be pathologically relevant in ischemia.

Keywords

chemoproteomics
photoaffinity labeling
lipids
membranes
click chemistry
diazirine
phospholipids

Supplementary materials

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Supporting Information
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Gene Ontology analysis and list, Lipid quantification, and RNAi knockdown validation (Figures S1–S3 and Table S1), Materials and Methods, Synthetic Methods, NMR spectra, and Associated References (PDF).
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Table S2
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Raw proteomics data (Table S2) (XLSX).
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