Assessing non-bonded aggregates populations: application to the concentration-dependent IR O-H band of phenol

20 February 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

In this work, we present two alternative computational strategies to determine the populations of non-bonded aggregates. One approach extracts these populations from molecular dynamics (MD) simulations, while the other employs quantum mechanical partition functions for the most relevant minima of the multimolecular potential energy surfaces (PESs), identified by automated conformational sampling. In both cases, we adopt a common graph-theory-based framework, introduced in this work, for identifying aggregate conformations, which enables a consistent comparative assessment of both methodologies and provides insight into the underlying approximations. We apply both strategies to investigate phenol aggregates, up to the tetramer, at different concentrations in phenol/carbon tetrachloride mixtures. Subsequently, we simulate the concentration-dependent OH stretching IR region by averaging the harmonic IR spectra of aggregates using the populations predicted by each strategy. Our results indicate that the populations extracted from MD trajectories yield OH stretching signals that closely follow the experimental trends, outperforming the spectra from populations obtained by systematic conformational searches. Such a better performance of MD is attributed to a better description of the entropic contributions. Moreover, the proposed protocol not only successfully addresses a very challenging problem but also offers a benchmark to assess the accuracy of intermolecular force fields.

Keywords

Phenol aggretages
IR spectroscopy
Aggregate population
Hydrogen bonds

Supplementary materials

Title
Description
Actions
Title
Supporting Information
Description
Comprehensive explanation of the thresholds used to define non-covalent interactions and the interaction patterns employed to classify aggregate conformations. Details on the determination of the scaling factors for harmonic frequencies used in this work. Examination of the dependence of C/d populations and computed spectra on the thresholds and broadening parameter (HWHM), as well as the convergence of Q/s populations and both sets of spectra with the chosen QM set and HWHM parameter. Concentration measurements from the MD simulations, contributions to the free energy of QM-optimized conformers, and a comparison of the calculated equilibrium constants with values reported in the literature.
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.