Rigorous Treatment of Polytopal Rearrangements Reveal Surprising Complexity of Stereoisomerism Configuration Landscapes

12 February 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Previously we posited that a systematic and general description of stereoisomerism could be based upon the principles of the polytopal rearrangement model. The most daunting challenge to this end is to comprehensively describe all possible geometries for arbitrary n-coordinate centres, ABn, and for this we have developed a physically-inspired rigorous approach. Here we demonstrate the detailed application of this approach to the AB4 system focussing on e-symmetric distortions of tetrahedral geometry to generate an angular configuration space (the AB4 T-4 E-mode space). Analytic expressions for the A–Bi unit vector configurations are presented and the resulting spherical (2D) configuration space is shown to exhibit the symmetries of a disdyakis dodecahedron. Detailed inspection and analysis of the angular configuration space reveals that, in addition to the expected (T-4-R) ⇌ (T-4-S) pseudorotation, it features numerous “orientation permutations” that are also pseudorotations. Through the worked examples of SiF4, XeF4, and a chiral silane, we generate the corresponding potential energy surfaces and examine the wider implications. We also outline experimental opportunities for investigating the unexpected configuration space complexity that this work has revealed. This rigorous and mathematically comprehensive approach and framework we name the Polytope Formalism.

Keywords

Polytopal rearrangement
coordination geometry
Polytope Formalism

Supplementary materials

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Further details (analytic expressions for ABn configurations, polytope configuration symbol details, additional great circle trajectories, and the Gaussian16 script), Interactive Mathematica tools for exploring the configuration space.
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