Nuclear Coupled Electronic States Analyses Expose Nuclear Quantum Effects in Nucleobase Pairs

06 February 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Tautomerization by double proton transfer of nucleobase pairs leads to point mutations of nucleic acids. A series of constrained nuclear-electronic orbital calculations, combined with natural bond orbital and kinetic analyses, has quantitatively revealed the importance of nuclear quantum effects in the reaction. Compared to the case where the nuclei are treated classically, the probability of the formation of the tautomeric isomers of Cytosine-Guanine, explicitly taking into account the NQEs, increased by a factor of 8.0 in the gas phase and by a factor of 20.5 in water. This could be explained by the increase in the number of electrons occupying the reaction site’s antibonding orbitals. The proportion of Cytosine-Guanine tautomeric isomers formed by double proton transfer was estimated to be 246 pairs per human genome.

Keywords

DNA
mutation
Double proton transfer
Nuclear quantum effects
Electron topological analysis
Multi-component theory

Supplementary materials

Title
Description
Actions
Title
Supporting information
Description
S1. Theory S1-1 Natural Bond Orbital S1-2 Non-Covalent Interaction Analysis S2. Time Dependence of The Formation Probability of Tautomers S3. Visualization of Hydrogen Bonding Interaction by Hydrogen Bonding Distance and Non-Covalent Interaction Analysis in Stable Structure of C...G S4. Cartesian Coordinates of Reactants and Products
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