Sigmatropic rearrangement enables access to a highly stable spirocyclic nitroxide for protein spin labelling

17 January 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Spin labelling enables the study of biomolecules using electron paramagnetic resonance (EPR) spectroscopy. Here, we describe the synthesis of a cysteine-reactive spin label based on a spirocyclic pyrrolidinyl nitroxide containing an iodoacetamide moiety. The spin label was shown to be highly persistent under reducing conditions while maintaining excellent EPR relaxation parameters up to a temperature of 180 K. After successful double spin labelling of a calmodulin variant, interspin distances were measured by the electron paramagnetic resonance (EPR) spectroscopy experiment double electron-electron resonance (DEER) at 120 K.

Keywords

nitroxide
radical
electron paramagnetic resonance
Overman rearrangement
spin labelling
DEER
PELDOR

Supplementary materials

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Description
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Title
Supplementary Information
Description
Experimental details and procedures, compound characterisation, crystallography details, preparation of spin labelled protein, NMR and EPR data.
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