Boosting Predictability: Towards Rapid Estimation of Organic Molecule Solubility

16 January 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The water solubility of organic molecules is critical for optimizing the performance and stability of aqueous flow batteries, as well as for various other applications. Although relatively straightforward to measure in some cases, the theoretical prediction of the solubility remains a considerable challenge. To this end, machine learning algorithms have become increasingly important tools in the past decade. High-quality data and effective descriptors are essential for constructing reliable data-driven estimation models. We systematically investigate the effectiveness of enhanced structure-based descriptors and an outlier detection procedure for improving aqueous solubility predictability. We train and evaluate random forest regression models using various descriptors to predict experimental solubility. Outliers are identified through an iterative maximum-error deletion procedure. We discover that descriptors derived from hydration free energy and weighted fingerprints, along with other established features, are effective. Notably, solvation energy, octanol-water partition coefficient, atomic charge polarizability interactions, and the presence of a full-carbon aromatic ring are critical for solubility prediction. Furthermore, the effectiveness of the outlier detection protocol is validated by improving the performance of the model and detailed analysis of the dataset. This study significantly improves the predictive capacity of supervised machine learning for molecular properties, enabling advancements in various technological applications.

Keywords

Organic Molecule Solubility
Data Cleaning and Processing
Descriptors
Outlier Detection
Machine Learning Models

Supplementary materials

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Title
Supplementary Information for "Boosting Predictability: Towards Rapid Estimation of Organic Molecule Solubility"
Description
This file provides comprehensive details on the following: (i) names of 2D Descriptors derived from RDKit, (ii) clear explanations of the performance metrics, (iii) the temperature distribution at which solubility measurements were taken, (iv) insights into the relationships between the target variable and the most important descriptors, and (v) data on the pKa values of a select group of molecules.
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