Unveiling the Formation Pathway of Vaterite from Amorphous Calcium Carbonate Using Metadynamics Simulations

20 January 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Calcium carbonate is a compound that is widely distributed throughout the Earth as a natural mineral and a material produced by biological activities. The crystal structure of calcium carbonate has three polymorphs: the most thermodynamically stable calcite, followed by aragonite, vaterite, and amorphous \ce{CaCO3} (ACC). Of the three crystalline phases, the most unstable vaterite remains mysterious regarding its formation process and structure. In this study, the pathway of forming the vaterite crystal structure from ACC was reproduced using well-tempered metadynamics molecular dynamics simulations. The structures sampled at multiple minima on the energy landscape were refined through first-principles calculations based on density functional theory. The sampled structures were assigned space groups (SGs) and classified as calcite- and vaterite-like structures according to the arrangement of \ce{CO3^{2-}} and \ce{Ca^{2+}} sheets. The initial crystal structure produced from ACC was a monoclinic crystal with \ce{Ca^{2+}} sheets and \ce{CO3^{2-}} lying in the interlayer; however, it did not exhibit the three-fold symmetry of calcite. Calcite structures with three-fold symmetry, or orthorhombic crystals with rotated \ce{CO3^{2-}} units as found in vaterite, could be derived from this structure. The orthorhombic structure then transitioned to the more stable monoclinic form, which is likely vaterite. The understanding of phase transitions based on the diverse crystal structures of calcium carbonate revealed in this study provides a predictive view of biomineralization and carbonation reactions of cementitious materials.

Keywords

Calsium carbonate
Vaterite
Metadynamics
Phase transition

Supplementary materials

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Description
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time-varying FES
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A movie of time-varying FES with emergence of sampling points during WTMetaD.
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Supporting Information
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\item The free energy surface calculated from WTMetaD at \SI{9}{\mu s} and \SI{10.4}{\mu s} for convergence check. \item Crystalline structures and SGs of calcite- and vaterite-like structures detected by WTMetaD and refined via DFT calculations. \item All Crystallographic Information Files (CIFs) for the derived structures in this study. \item A movie of the time-varying FES with the emergence of sampling points during WTMetaD (movie\_FES.mp4).
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