HSADab2025: AI-powered Modelling of Human Serum Albumin

10 January 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Human serum albumin (HSA) as the most prevalent protein constitutes ~60% of the protein mass. In this work, we augment our previously released HSA database (HSADab) via the incorporation of AI-powered modelling. The constructed webserver www.hsadab.cn enables instant prediction of HSA binding affinities for drug-like molecules through various machine-learning predictors, hosts the most comprehensive affinity and structure banks containing all HSA-relevant data published so far, and contains a complete set of deep-learning assisted docking structures for molecules presented in the database. We additionally present comprehensive analyses on the protein conformational space, docking performance and AlphaFold modelling, and further open source the most robust fingerprints-based model in the GitHub repository https://github.com/proszxppp/HSADab.

Keywords

Human Serum Albumin
AlphaFold
Deep Learning
Clustering
Large Language Model
Graph Neural Network
Fingerprints
Random Forest
Gradient Boosting Trees
MM/GBSA
Free Energy Calculation
Boltz-1
Chai-1
DiffDock
AutoDock
PLANTS
End-point free energy calculation
Multi-modal Binding
Webserver
Binding Affinity
Molecular Docking
HSADab

Supplementary weblinks

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