Thermodynamics of Self Assembly and Supramolecular Transitions using Enhanced Sampling

08 January 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Computational studies of self-assembly have the potential to provide rich insights into their underlying thermodynamics and identify optimal system conditions for applications, such as nanomaterial synthesis or drug delivery. However, both self-assembly and supramolecular transitions can be hindered by free energy barriers, rendering them rare events on molecular timescales and making it challenging to sample them. Here, we show that the use of enhanced sampling techniques, when combined with a judiciously chosen set of order parameters, offers an efficient and robust route for characterizing the thermodynamics of self-assembly and supramolecular transitions. Specifically, we show that transitions between states with different periodicities or symmetries can be reversibly sampled by biasing a relatively small number of Fourier components of the particle density. We illustrate our approach by computing the free energy required to cleave a liquid slab and estimating the corresponding liquid-vapor surface tension. We also characterize the free energetics of the transition between spherical and rod-shaped droplets. These results serve as a first step towards the development of a systematic computational framework for exploring transitions in diverse supramolecular systems, such as surfactants or block copolymers, and characterizing the thermodynamics of their self-assembly.

Keywords

self-assembly
supramolecular transitions
molecular dynamics
enhanced sampling

Supplementary materials

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Description
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Supporting Information
Description
Derivation for the probability distribution of the Fourier-space density of an ideal gas system, additional information on the use of well potentials in the calculation of the interfacial tension, and additional details relating to the determination of the surface tension using the local pressure tensor.
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