MBX v1.2: Accelerating Data-Driven Many-Body Molecular Dynamics Simulations

26 December 2024, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The MBX software provides an advanced platform for molecular dynamics simulations, leveraging state-of-the-art MB-pol and MB-nrg data-driven many-body potential energy functions. Developed over the past decade, these potential energy functions integrate physics-based and machine-learned many-body terms trained on electronic structure data calculated at the ``gold standard'' coupled cluster level of theory. Recent advancements in MBX have focused on optimizing its performance, resulting in the release of MBX v1.2. While the inherently many-body nature of MB-pol and MB-nrg ensures high accuracy, it poses computational challenges. MBX v1.2 addresses these challenges with significant performance improvements, including enhanced parallelism that fully harnesses the power of modern multicore CPUs. These advancements enable simulations on nanosecond timescales for condensed-phase systems, significantly expanding the scope of high-accuracy, predictive simulations of complex molecular systems powered by data-driven many-body potential energy functions.

Keywords

many-body interactions
computer simulations
molecular dynamics
software

Supplementary materials

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Supporting Information
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Details on the profiling data (e.g., compiler versions, simulation lengths, time steps, MPI/OpenMP configurations, etc.).
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