Machine learning for transition state geometry prediction

26 December 2024, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The calculation of transition state (TS) geometries is essential for understanding reaction mechanisms and rational synthetic methodology design. However, traditional methods like density functional theory (DFT) are often too computationally expensive for large-scale TS identification and are significantly slower than high-throughput experimental screening methods. Recent advancements in machine learning (ML) offer promising alternatives, enabling the direct prediction of TS geometries, reducing the reliance on expensive quantum mechanical (QM) calculations and affording predictions ahead of experiment. The works explored here include the broader application of ML in reaction property prediction, emphasising how accurate TS geometries can serve as vital input data to improve model accuracy. A comprehensive review of ML methods developed to explicitly predict TS geometries are then presented, with attention to their application in downstream tasks, such as energy barrier calculations, and their use as initial structures for further optimisation via QM methods. Finally, a critical evaluation of the accuracy and limitations of existing TS prediction methods are discussed, highlighting challenges that impede wider adoption and areas where further research is needed.

Keywords

Machine Learning
Transition State
Geometry Prediction
Reaction Mechanisms

Supplementary materials

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Electronic Supplementary Information
Description
This includes: XYZ structures for RMSD-energy comparisons, tables for RMSD-energy comparisons, inclusion of metrics for the comparison of transition state (TS) geometry prediction table (Table 5) and a complete list of authors in the Gaussian16 Reference.
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