Accurate Ring Strain Energy Predictions with Machine Learning and Application in Strain-Promoted Reactions

19 November 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Ring strain energy (RSE) is crucial for understanding molecular reactivity. However, quantitatively determining RSE through experiments or quantum mechanics is resource-intensive, limiting its application on a large scale. We developed a physics-based workflow and a data-driven graph neural network (GNN) capable of reliably predicting RSE in minutes or milliseconds, respectively. For each molecule, the workflow first identifies low-energy conformers, then computes the RSE using the AIMNet2 machine learning interatomic potentials. We validated the approach both computationally and experimentally. Compared to the ωB97M-D4/Def2-TZVPP method, the workflow achieved an R² value of 0.997 and a mean absolute error (MAE) of 0.896 kcal/mol. Using this workflow, we distinguished reactive from non-reactive molecules in copper-free click chemistry and ring-opening metathesis polymerization, demonstrating the workflow's generalizability to diverse molecules. Furthermore, we compiled "RSE Atlas," a computational database of 16,905 single-ring molecules, providing a rich resource for examining factors influencing RSE. Employing this dataset, we trained a GNN that predicts RSE in milliseconds using only 2D molecular information. Our methods render RSE a readily computable property for on-the-fly applications in experimental and computational work.

Keywords

Ring strain energy
machine learning interatomic potential
click chemistry
reactivity
Ring opening metathesis polymerization

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