High Dimensional and Complex Spectrometric Data Analysis of an Organic Compound using Large Multimodal Models and Chained Outputs

12 September 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Large Multimodal Models (LMMs) possess the ability to analyze chemical spectra of an organic compound using state of the art conversational AI. These outputs can then be chained together and introduced as a text input for other LLMs or LMMs to predict the compound name. Here, a challenging 15 carbon molecule problem with 13 complex and high dimensional chemical spectra were analyzed as images by unmodified versions of Claude 3.5 Sonnet and OpenAI ChatGPT-4o models. ScholarGPT judged the responses across the 13 spectra with an average score of 9.01/10, and the highest response scores per individual spectra for 3.5 Sonnet or GPT-4o were used as the text-based chain. For Part B, the chain was then combined with two different prompt formats and the molecular formula to 8 different LMMs or LLMs which produced new compound predictions. 3.5 Sonnet had the highest proficiency in utilizing the formula simultaneously with complex data for three identical compound generations across two prompts, but was likely limited by the quality regarding the chain of 13, primarily with data from 6 2D NMR Spectra. 3.5 Sonnet's compound prediction was then further improved in Part C by utilizing manual chained explanations of the spectra by the author to yield what is believed to be the correct structure with stereochemistry to the unknown problem. To the author's best knowledge, this is the first LMM to generate the C15H22O2 drug compound derivative (S)-ibuprofen ethylester using high dimensional data from 13 detailed spectra. The purpose of this study was to utilize cutting edge natural language processing techniques to evaluate an advanced chemical structure consisting of IR, 1H-NMR, 13C-NMR, DEPT-NMR, GCOSY60, GTOCSY, GHMQC, GHMBC, GNOESY, and expanded views of spectra.

Keywords

High Dimensional Data
Large Multimodal Model
2D NMR

Supplementary materials

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Supplementary Information
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The supplementary file contains the Part A Judge Prompt, Large Multimodal Model generations, and Judge Responses for each of the 13 spectra.
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IR High Resolution Image
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Full sized image used in experiments.
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1H-NMR Full High Resolution Image
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Full sized image used in experiments.
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1H-NMR Table High Resolution Image
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Full sized image used in experiments.
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1H-NMR Zoom Downfield High Resolution Image
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Full sized image used in experiments.
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1H-NMR Zoom Upfield High Resolution Image
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Full sized image used in experiments.
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13C-NMR High Resolution Image
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Full sized image used in experiments.
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DEPT-NMR High Resolution Image
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Full sized image used in experiments.
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GCOSY60 High Resolution Image
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Full sized image used in experiments.
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GTOCSY High Resolution Image
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Full sized image used in experiments.
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GHMQC High Resolution Image
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Full sized image used in experiments.
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GHMBC High Resolution Image
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Full sized image used in experiments.
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GHMBC Zoom High Resolution Image
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Full sized image used in experiments.
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GNOESY High Resolution Image
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Full sized image used in experiments.
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Manuscript Spectra 7 of 13
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The first seven of thirteen spectra used in the manuscript.
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Manuscript Spectra 6 of 13
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The last six of thirteen spectra used in the manuscript.
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