Theoretical insight into adenine-uracil and adenine-thymine photodeactivation mechanisms.

16 July 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

In this work, a thorough description of the photochemical and photophysical response of the Watson--Crick base pairs of adenine with uracil (A-U) or thymine (A-T) according to the SCS-ADC(2) results is discussed. Although widely explored, these systems lack a complete characterization of possible intra- and intermolecular relaxation channels induced by charge- or proton-transfer phenomena that may result due to the interaction of nucleobases in electronically excited states. In particular, we address the still open debate on photodeactivation via purine-ring puckering at the C2 or C6-atom position. We also consider the presence of low-lying long-living $^1\mathrm{n}\pi^\ast$ states to be a significant factor in the relaxation handicap through the EDPT process, as population of these states leads to internal conversion processes or efficient intersystem crossing to triplet manifold, whose estimated rate of $1.6\times 10^{10}\; \mathrm{s}^{-1}$, exceeds by an order of magnitude the corresponding internal conversion to the ground state. Additionally, the use of the SCS variant of the ADC(2) method is shown to provide a more balanced description of valence and charge-transfer excited states.

Keywords

Base pairs
adenine-thymine
adenine-uracil
electron-driven proton transfer
internal conversion
intersystem crossing
conical intersection

Supplementary materials

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Description
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Title
Electronic Supplementary Information (ESI) for Theoretical insight into WC adenine-thymine and adenine-uracil photode- activation mechanisms.
Description
Electronic Supplementary Information (ESI) available: conformational analysis, selected excitation energies, spin-orbit couplings, results of transition rate calculations, and a scheme of deactivation mechanisms for the A-T WC base pair.
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