Investigation of the non-radiative photo-processes of unnatural DNA base: 7-(2-thienyl)-imidazo[4,5-b]pyridine (Ds) - A computational study

19 June 2024, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

7-(2-thienyl)-imidazo[4,5-b]pyridine (Ds) is an unnatural nucleic acid which forms stable pair with Pyrrole-2-carbaldehyde (Pa) in DNA. This Ds-Pa pair gets stabilized via van der Waals interaction and shape fitting. In our previous study,\cite{ghosh2021radiationless} we investigated the non-radiative photo-processes of unnatural DNA base Pa and also there are some studies on its stability and reactivity in the ground state. But to form a good unnatural base pair, one has to understand its stability not only in the ground state but also in the excited states after absorbing UV radiation. Therefore, in this study, the excited state photo-processes of Ds on UV irradiation and it's non-radiative decay channels have been investigated. It is shown using state of the art multi reference methods and this investigation finally leads the molecule to access minimum energy crossing point (MECP) via a downhill pathway.

Keywords

Unnatural nucleic acid bases
DNA bases
Nonradiative photo-processes of unnatural DNA bases
computational study of unnatural DNA base Ds
Conical intersection of unnatural DNA bases
Deactivation pathway of DNA UNB Ds

Supplementary materials

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Title
Investigating the non-radiative photo-processes of unnatural DNA base: 7-(2-thienyl)-imidazo[4,5-b]pyridine (Ds) - A computational study
Description
The supporting information file includes: 1. Cartesian coordinates of optimized ground state geometry of Ds. 2. Cartesian coordinates of minima of S2 state of Ds molecule. 3. CASSCF orbitals used in (8e,6o)/6-31+g(d) active space to search MECP and (10e,12o)/6-31+g(d) active space to calculate VEEs of Ds molecule. 4. Cartesian coordinates of optimized geometries of S1-S0 MECP of Ds. 5. MS-CASPT2 LIIC PES along two MECP of Ds molecule. 6. g and h-vectors and the values of topological parameters around MECP of Ds molecule.
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