Cryogenic Ion Vibrational Spectroscopy of Protonated Valine: Messenger Tag Effects

29 May 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

We report the infrared photodissociation spectrum of tagged protonated valine in the range 1000 – 1900 cm-1, prepared in a cryogenic ion trap. Comparison of experimental results with calculated infrared spectra based on density functional theory shows that the hydroxyl group of the carboxylic acid functionality and the protonated amine group adopt a trans configuration. Nitrogen and methane molecules were used as messenger tags, with optimal tagging temperatures of 30 K for N2 and 60 K for CH4. While the calculated infrared spectra of the tagged ion suggest only a weak influence of the messenger tag on the frequency positions of ValH+, the measured intensities for N2-tagged ValH+ are strongly suppressed for all but the highest frequency features at 1773 cm-1. We trace this behavior to the binding energy of the N2 tag, which is significantly higher than that of CH4, based on CCSD(T) calculations and rate estimates for photoinduced unimolecular dissociation from statistical theory.

Keywords

amino acids
infrared spectroscopy

Supplementary materials

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Supporting Information
Description
Calculated IR spectra of protonated valine and selected isomers; calculated IR spectra and lowest energy structures of trans-ValH+; lowest energy structures of ValH+, ValH+·N2 and ValH+·CH4; calculated IR spectra and lowest energy structures of ValH+·N2; IR photodissociation times of ValH+·N2 and ValH+·CH4; atomic coordinates for ValH+, ValH+·N2, and ValH+·CH4; unscaled vibrational frequencies of ValH+·N2 and ValH+·CH4.
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