Rapid interpretation of protein backbone rotation dynamics directly from spin relaxation data

23 May 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Besides structure, protein dynamics is pivotal for their functions, particularly for intrinsically disordered proteins (IDPs) that do not fold to a fixed 3D structure. Rapid rotations of chemical bonds in proteins can be detected measuring NMR spin relaxation rates, but interpretation of protein dynamics from the experimental data is arduous for IDPs or molecular assemblies with complex dynamic landscape. Here we demonstrate numerically that the total effective correlation times of protein backbone N-H bond rotations, τeff , can be calculated from experimentally measured transverse 15N spin relaxation rates, R2, using linear relation. Using molecular dynamics (MD) simulations, we show this for wide range of proteins, from short peptides to partially dis- ordered proteins and peptides in micelles. Significant practical advance of the result is demonstrated by interpreting dynamics of partially disordered proteins that are beyond the scope of current approaches to interpret spin relaxation rate experiments.

Keywords

NMR
intrinsically disordered proteins
protein dynamics
molecular dynamics simulations

Supplementary materials

Title
Description
Actions
Title
Supplementary information
Description
Supplementary methods and results.
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.