Seamless integration of GEM, a density based-force field, for QM/MM simulations via LICHEM, Psi4 and Tinker-HP

30 January 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Hybrid quantum mechanics/molecular mechanics (QM/MM) simulations have become an essential tool in computational chemistry, particularly for analyzing complex biological and condensed phase systems. Building on this foundation, our work presents a novel implementation of the Gaussian Electrostatic Model (GEM), a polarizable density-based force field, within the QM/MM framework. This advancement provides seamless integration, enabling efficient and optimized QM/GEM calculations in a single step using the LICHEM Code. We have successfully applied our implementation to water dimers and hexamers, demonstrating the ability to handle water systems with varying numbers of water molecules. Moreover, we have extended the application to describe the double proton transfer of the aspartic acid dimer in a box of water, which highlights the method's proficiency in investigating heterogeneous systems. Our implementation offers the flexibility to perform on-the-fly density fitting or to utilize pre-fitted coefficients to estimate exchange and Coulomb contributions. This flexibility enhances efficiency and accuracy in modeling molecular interactions, especially in systems where polarization effects are significant.

Keywords

QM/MM
SAPT
Density fitting
GEM

Supplementary materials

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Description
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Supplementary material
Description
Supplementary material available as a PDF containing details about individual energy contributions for water dimers, and CPU times, mean absolute errors, and standard deviations for water hexamers.
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Sample input files
Description
Input files for a water dimer and a water hexamer, and for double proton transfer in a model aspartic acid dimer.
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