Endergonic synthesis driven by chemical fuelling

17 January 2024, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Spontaneous chemical reactions proceed energetically downhill to either a local or global minimum, limiting possible transformations to those that are exergonic. Endergonic reactions do not proceed spontaneously and require an input of energy. Light has been used to drive a number of deracemisations and thermodynamically unfavourable bond-forming reactions, but is restricted to substrates that can absorb, directly or indirectly, energy provided by photons. In contrast, anabolism involves energetically uphill transformations powered by chemical fuels. Here we report on the transduction of energy from an artificial chemical fuel to drive a thermodynamically unfavourable Diels–Alder reaction. Carboxylic acid catalysed carbodiimide-to-urea formation is chemically orthogonal to the reaction of the diene and dienophile, but transiently brings the functional groups into close proximity, causing the otherwise prohibited cycloaddition to proceed in modest yield (15% after two fuelling cycles) and with high levels of regio- (>99%) and stereoselectivity (92:8 exo:endo). Kinetic asymmetry in the fuelling cycle ratchets the Diels–Alder reaction away from the equilibrium distribution of the Diels–Alder:retro-Diels–Alder products. The driving of the endergonic reaction occurs through a ratchet mechanism (an energy or information ratchet, depending on the synthetic protocol), reminiscent of how molecular machines directionally bias motion. Ratcheting synthesis has the potential to expand the synthetic chemistry toolbox, offering new paradigms in reactivity, complexity and control.

Keywords

endergonic
fuelling
non-equilibrium
chemostatting
orthogonal
ratchet
dissipative
Diels-Alder
systems chemistry
supramolecular chemistry
reaction mechanisms
kinetics

Supplementary materials

Title
Description
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Title
Supplementary Information for Endergonic Synthesis driven by Chemical Fuelling
Description
Supplementary Information containing a detailed description of how experiments were carried out, and some additional analysis for interested readers
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