Novel dihydropteridinone derivatives as potent and selective inhibitors of the understudied human vaccinia-related kinase 1 (VRK1)

04 December 2023, Version 1

Abstract

The human Vaccinia-Related Kinase 1 (VRK1) is highly expressed in various tumor types and plays important roles in cell proliferation and the maintenance of genome integrity. While prior genetic studies indicate that VRK1 inhibition offers therapeutic potential, especially in cancers deficient in VRK2 expression or DNA damage repair, the current lack of suitable VRK1 inhibitors hampers the validation of this kinase as a therapeutic target and the translation of these findings to the clinic. Here, we developed novel VRK1 inhibitors based on BI-D1870, a pteridinone inhibitor of RSK kinases. Our optimized VRK1 inhibitor displays improved kinome-wide selectivity, and effectively mimic cellular outcomes of VRK1 depletion. Notably, VRK1 inhibition triggered severe mitotic errors and genome instability in p53-deficient cells. Together, our findings highlight the potential of VRK1 inhibition in treating p53-deficient tumors and possibly enhancing the efficacy of existing cancer therapies that target DNA stability or cell division.

Keywords

Protein kinase
inhibitor
structure-based drug discovery

Supplementary materials

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Supporting Information
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Supplementary Figure S1 Supplementary Figure S2 Supplementary Figure S3 Supplementary Figure S4 Supplementary Figure S5 Supplementary Figure S6 Supplementary Figure S7 Supplementary Figure S8 Supplementary Figure S9 Supplementary Table S1 Supplementary Table S2 Supplementary Table S4 Chemical characterization data Chemistry – Chiral evaluation (analytical data)
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Supplementary Table S3
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Supplementary Table S3 - Data collection and refinement statistics
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Supplementary Table S5
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Supplementary Table S5 - Kinome-wide selectiviety assessment of various VRK1 inhibitors (% activity remaining at 1 micromolar compound)
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