LinChemIn: Route Arithmetic — Operations on Digital Synthetic Routes

03 November 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Computational tools are revolutionizing our understanding and prediction of chemical reactivity by combining traditional data analysis techniques with new predictive models. These tools extract additional value from the reaction data corpus, but to effectively convert this value into actionable knowledge, domain specialists need to interact easily with the computer-generated output. In this application note, we demonstrate the capabilities of the open-source Python toolkit LinChemIn, which simplifies the manipulation of reaction networks and provides advanced functionality for working with synthetic routes. LinChemIn ensures chemical consistency when merging, editing, mining, and analyzing reaction networks. Its flexible input interface can process routes from various sources, including predictive models and expert input. The toolkit also efficiently extracts individual routes from the combined synthetic tree, identifying alternative paths and reaction combinations. By reducing the operational barrier to accessing and analyzing synthetic routes from multiple sources, LinChemIn facilitates a constructive interplay between Artificial Intelligence and human expertise.

Keywords

cheminformatics
graph operations
synthetic routes

Supplementary materials

Title
Description
Actions
Title
Synthetic routes
Description
Pictures of all the synthetic routes used in the case study presented in the paper.
Actions

Supplementary weblinks

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