A Quantum Definition of Molecular Structure

11 October 2023, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Molecular structure, a key concept of chemistry, has remained elusive from the perspective of all-particle quantum mechanics despite many efforts. Viewing molecular structure as a manifestation of strong statistical correlation between nuclear positions, we propose a practical method based on Markov chain Monte Carlo sampling and unsupervised machine learning. Application to the D3+ molecule unambiguously shows that it possesses an equilateral triangular structure. These results provide a major step forward in our understanding of molecular structure from fundamental quantum principles.

Keywords

molecular structure
Markov Chain Monte Carlo
k-medoids clustering
non-Born–Oppenheimer

Supplementary materials

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Description
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Supporting Information: A Quantum Definition of Molecular Structure
Description
Theoretical background information, computational details for all simulations reported herein (PDF)
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ORCA input file
Description
ORCA input file for the full configuration interaction calculation (TXT)
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