GPT like transformer based conditional molecule generator and a high drug-likeness (QED) dataset generation

07 June 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

This study presents the development and evaluation of a novel GPT-like conditional molecule generator designed to optimize the synthesis of chemical compounds with desirable properties. The model incorporates six pivotal physicochemical properties as conditions: molecular weight, number of non-hydrogen atoms, ring count, hydrophobicity, quantitative estimation of drug-likeness (QED), and synthetic accessibility score (SAS). By integrating these specific attributes, the generator successfully produced a high-QED database, consisting of approximately 2 million molecules, all exhibiting a QED higher than 0.9. This achievement not only demonstrates the model's effectiveness in generating structurally diverse and potentially pharmacologically viable molecules but also underscores its utility in accelerating drug discovery processes.

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