Assessment of essential information in the Fourier domain to accelerate Raman hyperspectral microimaging

10 July 2023, Version 3
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

In the context of multivariate curve resolution (MCR) and spectral unmixing, essential information (EI) corresponds to the most linearly dissimilar rows or/and columns of a two-way data matrix. In recent works, the assessment of EI has been revealed to be a very useful practical tool to select the most relevant spectral information before MCR analysis, key features being speed and compression ability. However, the canonical approach relies on principal component analysis (PCA) to evaluate the convex hull that encapsulates the data structure in the normalized scores space. This implies that the evaluation of the essentiality of each spectrum can only be achieved after all the spectra have been acquired by the instrument. This paper proposes a new approach to extract EI in the Fourier domain (EIFD). Spectral information is transformed into Fourier coefficients and EI is assessed from a convex hull analysis of the data point cloud in the 2D phasor plots of a few selected harmonics. Because the coordinate system of a phasor plot does not depend on the data themselves, the evaluation of the essentiality of the information carried by each spectrum can be achieved individually and independently from the others. As a result, time-consuming operations like Raman spectral imaging can be significantly accelerated exploiting a chemometric-driven (i.e., based on the EI content of a spectral pixel) procedure for data acquisition and targeted sampling. The usefulness of EIFD is shown by analyzing Raman hyperspectral microimaging data, demonstrating a potential 50-fold acceleration of Raman acquisition.

Keywords

linear unmixing
essential information
convex hull
Fast Fourier Transform (FFT)
Raman hyperspectral microimaging
selective sampling

Supplementary materials

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Assessment of essential information in the Fourier domain to accelerate Raman hyperspectral microimaging - Supporting information
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The file contains the code exploited to generate all the outcomes reported in the main document as well as additional results and mathemtical derivations supporting the conclusions drawn.
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