Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations

23 May 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner considerable interest as emerging charge-transport systems and molecular electronics. To shed mechanistic insight into these electronic properties, we carried out large-scale DFT calculations (up to 650 atoms) to systematically analyze the structural and electron/hole transport properties of fully periodic single- and double-stranded DNA. We examined the performance of various exchange-correlation functionals (LDA, BLYP, B3LYP, and B3LYP-D) and found that single-stranded thymine (T) and cytosine (C) are predominantly hole conductors, whereas single-stranded adenine (A) and guanine (G) are better electron conductors. For double-stranded DNA structures, the periodic A-T and G-C electronic band structures undergo a significant renormalization, which causes hole transport to only occur on the A and G nucleobases. Our calculations (1) provide new benchmarks for periodic nucleobase structures using dispersion-corrected hybrid functionals with large basis sets and (2) highlight the importance of dispersion effects for obtaining accurate geometries and electron/hole mobilities in these extended systems.

Keywords

DNA
electron mobility
hole mobility
DFT
charge-transport
computational chemistry
electron transport
hole transport
periodic
band structure
density functional theory

Supplementary materials

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Supplementary Information
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Lattice parameters, bandgaps, elastic constants, deformation potential constants, electron/hole effective masses, electron/hole mobilities, and electronic band structures for all ssDNA and dsDNA structures obtained with various exchange-correlation functionals, and Cartesian coordinates of all ssDNA and dsDNA structures optimized at the B3LYP-D/6-31g(d) level of theory.
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3D animation of HOCO of DNA
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3D animations of HOCO of DNA
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3D animations of LUCO
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3D animations of LUCO
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