Abstract
Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner considerable interest as emerging charge-transport systems and molecular electronics. To shed mechanistic insight into these electronic properties, we carried out large-scale DFT calculations (up to 650 atoms) to systematically analyze the structural and electron/hole transport properties of fully periodic single- and double-stranded DNA. We examined the performance of various exchange-correlation functionals (LDA, BLYP, B3LYP, and B3LYP-D) and found that single-stranded thymine (T) and cytosine (C) are predominantly hole conductors, whereas single-stranded adenine (A) and guanine (G) are better electron conductors. For double-stranded DNA structures, the periodic A-T and G-C electronic band structures undergo a significant renormalization, which causes hole transport to only occur on the A and G nucleobases. Our calculations (1) provide new benchmarks for periodic nucleobase structures using dispersion-corrected hybrid functionals with large basis sets and (2) highlight the importance of dispersion effects for obtaining accurate geometries and electron/hole mobilities in these extended systems.
Supplementary materials
Title
Supplementary Information
Description
Lattice parameters, bandgaps, elastic constants, deformation potential constants, electron/hole effective masses, electron/hole mobilities, and electronic band structures for all ssDNA and dsDNA structures obtained with various exchange-correlation functionals, and Cartesian coordinates of all ssDNA and dsDNA structures optimized at the B3LYP-D/6-31g(d) level of theory.
Actions
Title
3D animation of HOCO of DNA
Description
3D animations of HOCO of DNA
Actions
Title
3D animations of LUCO
Description
3D animations of LUCO
Actions