Quantifying and modulating protein encapsulation in guanosine-based supramolecular particles

22 May 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The encapsulation of proteins is an effective way to preserve their structure and enhance their function. One exciting possibility is adjusting the protective agent to match the specific protein's characteristics to influence its properties. In a recent study, we developed a flow cytometry-based method to quantify the encapsulation of small molecule dyes in colloidal particles made from guanosine derivatives (SHS particles). We aimed to determine if this method could quantify protein encapsulation and track changes and if proteins could be tuned to bind to these particles. Our results showed that FITC-labeled proteins had apparent association constants in the micromolar range, with hydrophobicity as the dominant factor enhancing the affinities. Confocal laser scanning microscopy imaging supported these results and provided additional information about protein distribution within the particles. We also tested the feasibility of tuning avidin affinity (AVI) for SHS particles with a biotin ligand. We found that increasing the amount of biotin initially enhanced AVI binding, but then reached saturation, which we hypothesize results from non-covalent cross-linking caused by strong biotin/AVI interactions. CLSM images showed that the linker also impacted AVI distribution within the particles. Our strategy provides an advantage over other methods for quantifying protein encapsulation by being suitable for high-throughput analysis with high reproducibility. We anticipate that future efforts of using lower affinity ligands would result in better strategies for modulating protein affinity for drug-delivery applications.

Keywords

supramolecular particles
flow cytometry
protein encapsulation
self-assembly
protein binding
molecular recognition

Supplementary materials

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Supporting Information File
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1. General experimental procedures; 2. Dynamic Light Scattering and Zeta Potential measurements of SHS1 and SHS2; 3. Density plots and histograms of SHS1 and SHS2; 4. Binding isotherms of SHS1 and SHS2; 5. Correlation graphs of apparent protein affinities towards SHS particles; 6. Encapsulation efficiency as determined by Confocal Scanning Laser Microscopy; 7. Synthesis and characterization of G-derivatives 3 and 4; 9. Dynamic Light Scattering and Zeta Potential measurements of biotinylated SHS particles; 10. Flow cytometry and encapsulation efficiency studies of heteromeric assemblies; 11. Supporting References
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