Identifying Coarse-Grained Representations for Electronic Predictions

27 April 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Coarse-grained (CG) simulations are an important computational tool in chemistry and materials science. Recently, systematic ``bottom-up" CG models have been introduced to capture electronic structure variations of molecules and polymers at the CG resolution. However, the performance of these models is limited by the ability to select reduced representations that preserve electronic structure information, which remains a challenge. We propose two methods for (i) identifying important electronically coupled atomic degrees of freedom and (ii) scoring the efficacy of CG representations used in conjunction with CG electronic predictions. The first method is a physically-motivated approach that incorporates nuclear vibrations and electronic structure derived from simple quantum chemical calculations. We complement this physically-motivated approach with a machine learning technique based on the marginal contribution of nuclear degrees of freedom to electronic prediction accuracy using an equivariant graph neural network. By integrating these two approaches, we can both identify critical electronically coupled atomic coordinates and score the efficacy of arbitrary CG representations for making electronic predictions. We leverage this capability to make a connection between optimized CG representations and the future potential for ``bottom-up" development of simplified model Hamiltonians incorporating non-linear vibrational modes.

Keywords

coarse-graining

Supplementary materials

Title
Description
Actions
Title
Supporting Information for Main Text
Description
Contains details of MD, quantum chemistry, and machine learning protocols in the main text.
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.