Molecular dynamics studies of Ho(III) aqua-tris(dibenzoylmethane) complex: Role of water dynamics

20 April 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The seven-coordinate Ho(III) aqua-tris(dibenzoylmethane) complex, referred to as Ho-(DBM)3.H2O, was first reported in the late 1960s. It has a three-fold symmetric structure, with Ho at the center of three {\ligand} ligands and hydrogen bonded to a water molecule. It is considered that the hydrogen bonds between the water molecule and the ligands surrounding Ho play an important role in the formation of its symmetrical structure. In this work, we developed new force-field parameters for classical molecular dynamics (CMD) simulations to theoretically elucidate the structure and dynamics of Ho-(DBM)3.H2O. To develop the force field, structural optimization and molecular dynamics were performed on the basis of ab initio calculations using the plane-wave pseudopotential method. The force-field parameters for CMD were then optimized to reproduce the data obtained from the ab initio calculations. Validation of the developed force field showed good agreement with the experimental crystalline structure and the ab initio data. The vibrational properties of water in Ho-(DBM)3.H2O were investigated by comparison with bulk liquid water. The vibrational motion of water was found to have a characteristic mode originating from stationary rotational motion along the c axis of Ho(III) aqua-tris(dibenzoylmethane). Contrary to expectations, the hydrogen-bond dynamics of water in Ho-(DBM)3.H2O were found to be almost equivalent to those of bulk liquid water except for librational motion. This development route for force-field parameters for CMD and the establishment of water dynamics can advance the understanding of water-coordinated metal complexes with high coordination numbers such as Ho-(DBM)3.H2O.

Keywords

molecular dynamics
Ho complex
water dynamics
forcefield

Supplementary materials

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LAMMPS input files
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LAMMPS input files for Ho(III) aqua-tris(dibenzoylmethane) complex
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A video made from CMD simulation
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A video made from CMD calculations of Ho(III) aqua-tris(dibenzoylmethane) complex for 100 ps at 300 K
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Supporting Information
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Analytic conditions and results of the SC-XRD; Functional forms of the developed force-field parameters for the CMD calculations; The developed force-field parameters for Ho(III) aqua-tris(dibenzoylmethane) complex; Validation results obtained from a grid-search for the parameters of the atomic weightings for the objective function; Differences in the energy and stress components between the AIMD and CMD results.
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Crystallographic information file
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Crystallographic information file for the Ho(III) aqua-tris(dibenzoylmethane) analyzed in this study
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