A “Common-Precursor” Protein Mimetic Approach to Rescue Aβ Aggregation-mediated Alzheimer’s Phenotypes

06 April 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Abberent protein-protein interactions (aPPIs) are associated with an array of pathological conditions, which make them important therapeutic targets. The aPPIs are mediated via specific chemical interactions that spread over a large and hydrophobic surface. Therefore, ligands that can complement the surface topography and chemical fingerprints could manipulate aPPIs. Oligopyridylamides (OPs) are synthetic protein mimetics that have been shown to manipulate aPPIs. However, the previous OP library used to disrupt these aPPIs was moderate in number (~30 OPs) with very limited chemical diversity. The onus is on the laborious and time-consuming synthetic pathways with multiple chromatography steps. We have developed a novel chromatography-free technique to synthesize a highly diverse chemical library of OPs using a “common-precursor” approach. We significantly expanded the chemical diversity of OPs using a chromatography-free high-yielding method. To validate our novel approach, we have synthesized an OP with identical chemical diversity to a pre-existing OP-base potent inhibitor of Aβ aggregation, a process central to Alzheimer’s disease (AD). The newly synthesized OP ligand (RD242) was very potent in inhibiting Aβ aggregation and rescuing AD phenotypes in an in vivo model. Moreover, RD242 was very effective in rescuing AD phenotypes in a post-disease onset AD model. We envision that our “common-precursor” synthetic approach will have tremendous potential as it is expandable for other oligoamide scaffolds to enhance affinity for disease-relevant targets.

Keywords

Alzheimer's disease
Aggregation
Common Precursor
Chromatography Free
Library Synthesis
Synthetic Protein Mimetics
C. Elegans Alzheimer's Model

Supplementary materials

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Supplementary Information
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Included is the general synthesis of all molecules produced in this work along with characterization including 1H NMR and HRMS for all compounds. Also included is a physiochemical comparison of the lead therapeutic compound.
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