Phase-field modelling of molecular dynamics

21 April 2022, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Molecular dynamics simulation has been widely used to investigate underlying mechanisms of many phenomena from the atomic scale. However, it is often difficult for conventional molecular dynamics to treat a longer time scale because they are based on Newton’s equation. Here, we propose a new molecular dynamics modelling based on a diffusive equation, that is, phase-field modelling of molecular dynamics. Our proposal successfully reproduces the dynamics of a single atom under an electric field, the repulsion of two atoms, and a molecular structure with chemical bonds. Moreover, we found that the time development by our modelling corresponds with the time-averaged one by conventional molecular dynamics. This phase-field modelling of molecules will be a powerful strategy to investigate longer time scale phenomena.

Keywords

phase-field
Molecular dynamics

Supplementary materials

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Supplemental information for Phase-field modelling of molecular dynamics
Description
Gaussian fitting (Figure S1-S2), Fourier spectral method, and differentials of force field potentials
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