Emerging Era of Biomolecular Membrane Simulations: Automated Physically-Justified Force Field Development and Quality-Evaluated Databanks

22 March 2022, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Molecular simulations of biological membranes and proxies thereof are entering a new era characterized by several key aspects. Progress starts with the realization that the outcome of the simulations can be only as good as the underlying force field and we actually need to know precisely how good or bad the results are. Therefore, standardized procedures for data quality evaluation are being established and will be applied to biomembrane simulations available in the literature. This provides the necessary basis and impetus for new force field development. Here, we propose to systematically build up physically well-justified models which effectively account for electronic polarization effects for all components of the biomembrane systems in aqueous environments. Such a massive task can only be achieved within a reasonable timescale by applying automated parameterization tools.

Keywords

ECC
NMR
Databank
ML
Force Fields
Membranes

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