Facile and Low-Waste Self-Digitization of Samples by Oil-Triggered, Template-Confined Dewetting on a Networked Microwell Array

31 January 2022, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

In this work, we present a simple, straightforward, and robust method for spontaneously digitizing samples into an array of dis-crete volumes. The method is based on an oil-triggered, template-confined dewetting phenomenon. To realize the dewetting-induced sample digitization, an aqueous sample is firstly infused into a networked microwell array (NMA) through a predegassing-based self-pumping mechanism, and then an immiscible oil phase is applied over the surface of NMA chip to induce the templated dewetting. Due to a periodic interfacial tension heterogeneity, such dewetting ruptures the sample at the thinnest parts (i.e., con-nection channels) and spontaneously splits the sample into droplets in individual microwells. Without requiring any complex pump-ing or valving systems, this method can discretize a sample into tens of thousands of addressable droplets in a matter of minutes with nearly 98% usage. To demonstrate the utility and universality of this self-digitization method, we exploited it to discretize samples into 40,233 wells for digital PCR assay, digital quantification of bacteria, and self-assembly of spherical colloidal photonic crystals. We believe this facile technique will be useful in a broad range of applications where partitioning of samples into a large number of small individual volumes is required.

Keywords

templated dewetting
self-digitization
digital bioassay
spherical colloidal photonic crystal

Supplementary materials

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Supporting Information
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Calculation of sample utilization rate during self-digitization with the NMA chip, measurement of oil/water/PDMS three-phase contact angle, and measurement of E. coli JM109 stock concentrations via plating; Figures including schematic dia-grams for the fabrication procedure of spherical colloidal pho-tonic crystals using our self-digitization method and measure-ment of E. coli JM109 stock concentration via plating; Table including the materials and physical parameters used for the numerical simulation (PDF)
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Movie S1
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Demonstration of the operation of the NMA chip for sample digitization
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Movie S2
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Demonstration of the dynamic behavior of the oil-triggered, templated dewetting in a NMA chip (bird's eye view)
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Movie S3
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Demonstration of the deformation/evoluation of oil/water inter-faces after introducing an oil phase on the surface of a NMA chip (Cross-sectional view)
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Movie S4
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Demonstration of the dynamic pressure mapping of the two-phase system in a NMA chip during the self-digitization process (Front view)
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