Abstract
Polymer-protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by a vast chemical and composition space.
Here, we report a strategy to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique chemistries for each enzyme. Overall, this work broadens our capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions towards the design of robust polymer-protein hybrid materials.
Supplementary materials
Title
Supporting Information for Machine Learning on a Robotic Platform for the Design of Polymer-Protein Hybrids
Description
Chemical Space of Seed Dataset
Polymer Featurization and Initial Modeling
REA Distributions Through Iterations of Design
Model Robustness to Noise
Characterization of EP1
Circular Dichroism Spectroscopy
Small Angle X-Ray Scattering
Dynamic Light Scattering
Quartz Crystal Microbalance
Penalty Function
Classifier Implementation
Polymer Seed Library
Active Learning Polymer Iterations – Horseradish Peroxidase (HRP)
Active Learning Polymer Iterations – Glucose Oxidase (GOx)
Active Learning Polymer Iterations – Lipase (Lip)
Actions