Hydrophobic association and solvation of neopentane in Urea, TMAO and Urea-TMAO solution

01 November 2021, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

A detailed knowledge on hydrophobic association and solvation is crucial in understanding the con-formational stability of proteins and polymers in osmolyte solutions. Using Molecular Dynamics simulations, we found the hydrophobic association using neopentane molecules is greater in mixed urea-TMAO-water solution in comparison to that in 8 M urea solution, in 4 M TMAO solution and in neat water. The neopentane association in urea solution is greater than that in TMAO solution or neat water. We find the association is even less in TMAO solution than pure water. From free ener-gy calculations, it is revealed that the neopentane sized cavity creation in mixed urea-TMAO-water is most unfavorable and that causes the highest hydrophobic association. The cavity formation in urea solution is either more unfavorable or comparable to that in TMAO solution. Importantly, it is found that the population of neopentane-neopentane contact pair and the free energy contribution for cavity formation step in TMAO solution are very sensitive towards the choice of TMAO force-fields. A careful construction of TMAO force-fields is important for studying hydrophobic associa-tion. Interestingly it is observed that the total solute-solvent dispersion interaction energy contribu-tion is always most favorable in mixed urea-TMAO-water. The magnitude of this interaction energy is greater in urea solution relative to TMAO solution for two different force-fields of TMAO, whereas the lowest value is obtained in pure water. It is revealed that the extent of the overall hy-drophobic association in osmolyte solutions is mainly governed by the cavity creation step and it nullifies the contribution comes from the solute-solvent interaction contribution.

Keywords

Hydrophobic association
Cavity free energy
Radial distribution functions
Preferential binding coefficients
Kirkwood-Buff integrals

Supplementary materials

Title
Description
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Title
Supplementary Material for Hydrophobic association and solvation of neopentane in Urea, TMAO and Urea-TMAO solution
Description
The Figure S1 and Tables S-I to S-III are provided in supplementary material. The radial distribution functions between cavity and different sites of urea molecule in water-urea mixture and RDFs be-tween cavity and different sites of TMAO are given in Figure S1. The running coordination number of water, urea and TMAO molecules around neopentane and cavity are provided in Tables S1 and S2 respectively. The raw data of solute-solvent interaction energy is given in Table S3.
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