Benchmarking computational methods to calculate the octanol/water partition coefficients of a diverse set of organic molecules

19 October 2021, Version 1

Abstract

In the discovery process of new drugs and the development of novel therapies in medicine, computational modeling is a complementary tool for the design of new molecules by predicting for example their solubility in different solvents. Here, we benchmarked several computational methods to calculate the partition coefficients of a diverse set of 161 organic molecules with experimental logP values obtained from the literature. In general, density functional theory methods yielded the best correlations and lower average deviations. Although results are obtained faster with semiempirical and molecular mechanics methodologies, these methods yielded higher average deviations and lower correlation coefficients than hybrid density functional theory methods. We recommend the use of an empirical formula to correct the calculated values with each methodology tested.

Keywords

logP
density functional theory
molecular mechanics
semiempirical methods
partition coefficients
water/octanol

Supplementary materials

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Supporting Information 1
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Tables with experimental and calculated logP values. Plots for correlations not included in the main article. Structures for the 161 molecules studied.
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Supporting Information 2
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Tables with experimental and calculated logP values. Calculation of MAD, Max residuals and correlation coefficients.
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