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What Accounts for the Different Function in Photolyases and Cryptochromes: A Computational Study of Critical Events in the Protein Active Site

preprint
submitted on 01.02.2019 and posted on 05.02.2019 by Daniel Holub, Thilo Mast, Tomáš Kubař, Marcus Elstner, Natacha Gillet
In the current work, we present a combination of various classical and quantum computational protocols to unveil the molecular mechanism of FAD protonation in E. coli photolyase and its mutant. A direct comparison to our previous study on the plant cryptochrome clearly shows the great influence of the electrostatic environment and the flexibility of the FAD pocket on the proton transfer mechanism. Additionally, we propose a proton transfer pathway for WT E. coli photolyase consistent with experimental observations. Taken together, our results and previous experimental data provide a comprehensive picture about the functional differentiation in the cryptochrome-photolyase family.

History

Email Address of Submitting Author

natacha.gillet@kit.edu

Institution

Karlsruhe Institute of Technology

Country

Germany

ORCID For Submitting Author

0000-0002-7657-6861

Declaration of Conflict of Interest

no conflict of interst

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