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Water-Mediated Electronic Structure of Oligopeptides Probed by Their UV Circular Dichroism, Absorption Spectra, and Time-Dependent DFT Calculations

preprint
revised on 09.03.2020 and posted on 10.03.2020 by Anshuman Kumar, Siobhan E. Toal, David DiGuiseppi, Reinhard Schweitzer-Stenner, Bryan Wong

We investigate the UV absorption spectra of a series of cationic GxG (where x denotes a guest residue) peptides in aqueous solution and find that the spectra of a subset of peptides with x = A, L, I, K, N, and R (and, to a lesser extent, peptides with x = D and V) vary as a function of temperature. To explore whether or not this observation reflects conformational dependencies, we carry out time-dependent density functional calculations for the polyproline II (pPII) and β-strand conformations of a limited set of tripeptides (x = A, V, I, L, and R) in implicit and explicit water. We find that the calculated CD spectra for pPII can qualitatively account for the experimental spectra irrespective of the water model. The reproduction of the β-strand UV-CD spectra, however, requires the explicit consideration of water. Based on the calculated absorption spectra, we explain the observed temperature dependence of the experimental spectra as being caused by a reduced dispersion (larger spectral density) of the overlapping NV2 band and the influence of water on electronic transitions in the β-strand conformation. Contrary to conventional wisdom, we find that both the NV1 and NV2 band are the envelopes of contributions from multiple transitions that involve more than just the HOMOs and LUMOs of the peptide groups. A natural transition orbital analysis reveals that some of the transitions with significant oscillator strength have a charge-transfer character. The overall manifold of transitions, in conjunction with their strengths and characters, depends on the peptide’s backbone conformation, peptide hydration, and also on the side chain of the guest residue. It is particularly noteworthy that molecular orbitals of water contribute significantly to transitions in β-strand conformations. Our results reveal that peptide groups, side chains, and hydration shells must be considered as an entity for a physically valid characterization of UV absorbance and circular dichroism.

Funding

National Science Foundation (DMR 1707770)

Office of Naval Research (Grant N00014-18-1-2740)

History

Email Address of Submitting Author

usagi@alum.mit.edu

Institution

University of California, Riverside

Country

United States

ORCID For Submitting Author

0000-0002-3477-8043

Declaration of Conflict of Interest

No conflict of interest

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