ChemRxiv
These are preliminary reports that have not been peer-reviewed. They should not be regarded as conclusive, guide clinical practice/health-related behavior, or be reported in news media as established information. For more information, please see our FAQs.
1/1
0/0

Data-driven analysis of the number of Lennard-Jones types needed in a force field

preprint
submitted on 20.05.2020 and posted on 22.05.2020 by Michael Schauperl, Sophie Kantonen, Lee-Ping Wang, Michael Gilson

We optimized force fields with smaller and larger sets of chemically motivated Lennard-Jones types against the experimental properties of organic liquids. Surprisingly, we obtained results as good as or better than those from much more complex typing schemes from exceedingly simple sets of LJ types; e.g. a model with only two types of hydrogen and only one type apiece for carbon, nitrogen and oxygen.

The results justify sharply limiting the number of parameters to be optimized in future force field development work, thus reducing the risks of overfitting and the difficulties of reaching a global optimum in the multidimensional parameter space. They thus increase our chances of arriving at well-optimized force fields that will improve predictive accuracy, with applications in biomolecular modeling and computer-aided drug design. The results also prove the feasibility and value of a rigorous, data-driven approach to advancing the science of force field development.

Funding

NIGMS GM061300,Austrian Science Fund (Erwin Schrödinger fellowship J-4150,ACS Petroleum Research Fund, award #58158-DNI6

History

Email Address of Submitting Author

mgilson@health.ucsd.edu

Institution

UC San Diego

Country

USA

ORCID For Submitting Author

0000-0002-3375-1738

Declaration of Conflict of Interest

MKG has an equity interest in and is a cofounder and scientific advisor of VeraChem LLC.

Exports

Logo branding

Exports