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CJC JO LK Met-PAIR ManuscriptPNG 2019.10.10.pdf (1.93 MB)
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An Activity-Based Methionine Bioconjugation Approach to Developing Proximity-Activated Imaging Reporters

preprint
submitted on 10.10.2019 and posted on 16.10.2019 by Jun Ohata, Lakshmi Krishnamoorthy, Monica Gonzalez, Tong Xiao, Diana Iovan, F. Dean Toste, Evan Miller, Christopher Chang
Chemical probes that report on protein activity, rather than protein abundance, with spatial and temporal resolution can enable studies of their native function in biological contexts as well as provide opportunities for developing new types of biochemical reporters. Here we present a sensing platform, termed proximity-activated imaging reporter (PAIR), which combines activity-based methionine bioconjugation and antibody labeling with proximity-dependent oligonucleotide-based amplification to monitor dynamic changes of a given analyte in cells and animals through context-dependent methionine labeling of specific protein targets. We establish this PAIR method to develop sensors for imaging reactive oxygen species (ROS) and calcium ions through oxaziridine-directed labeling of reactive methionine residues on β-actin and calmodulin (CaM), respectively, where the extent of methionine bioconjugation on these protein targets can serve as an indicator of oxidative stress or calcium status. In particular, application of PAIR to activity-based CaM detection provides a method for imaging integrated calcium activity in both in vitro cell and in vivo zebrafish models. By relying on native protein biochemistry, PAIR enables redox and metal imaging without introduction of external small-molecules or genetically encoded indicators that can potentially buffer the natural/existing pools. This approach can be potentially generalized to target a broader range of analytes by pairing appropriate activity-based protein probes with protein detection reagents in a proximity-driven manner, providing a starting point not only for designing new sensors but also for monitoring endogenous activity of specific protein targets in biological specimens with spatial and temporal fidelity.

Funding

NIH R01 GM079465

NIH P42 ES0047045

NIH R35 GM119855

History

Email Address of Submitting Author

jo11@berkeley.edu

Institution

University of California, Berkeley

Country

USA

ORCID For Submitting Author

0000-0002-3614-7472

Declaration of Conflict of Interest

The authors declare no competing financial interest

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